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Beef cattle body temperature during climatic stress: a genome-wide association study

机译:气候胁迫期间的牛肉体温: 全基因组关联研究

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摘要

Cattle are reared in diverse environments and collecting phenotypic body temperature (BT) measurements to characterize BT variation across diverse environments is difficult and expensive. To better understand the genetic basis of BT regulation, a genome-wide association study was conducted utilizing crossbred steers and heifers totaling 239 animals of unknown pedigree and breed fraction. During predicted extreme heat and cold stress events, hourly tympanic and vaginal BT devices were placed in steers and heifers, respect i v e l y. I n d i v i dua l s we r e genotyped with t h e BovineSNP50K_v2 assay and data analyzed using Bayesian models for area under the curve (AUC), a measure of BTover time, using hourly BT observations summed across 5-days (AUC summer 5-day (AUCS5D) and AUC winter 5-day (AUCW5D)). Posterior heritability estimates were moderate to high and were estimated to be 0.68 and 0.21 for AUCS5D and AUCW5D, respectively.Moderately positive correlations between direct genomic values for AUCS5D and AUCW5D (0.40) were found, although a small percentage of the top 5 % 1-Mb windows were in common. Different sets of genes were associated with BT during winter and summer, thus simultaneous selection for animals tolerant to both heat and cold appears possible.
机译:牛在不同的环境中饲养,收集表型体温(BT)测量值以表征不同环境中BT的变化既困难又昂贵。为了更好地了解BT调节的遗传基础,利用杂种公牛和小母牛进行了全基因组关联研究,共有239只家谱和品种分数未知的动物。在预计的极端高温和低温胁迫事件期间,应每小时将鼓膜和阴道BT设备放置在公牛和母牛后备箱中,以备不时之需。我们使用BovineSNP50K_v2测定法对基因型进行了基因分型,并使用贝叶斯模型对曲线下面积(AUC)进行了数据分析,该曲线下面积是BT穿越时间的量度,使用了5天的每小时BT观测值进行汇总(AUC夏季5天(AUCS5D))和AUC冬季5天(AUCW5D))。后遗传度估计值是中到高的,AUCS5D和AUCW5D的后遗传力估计分别为0.68和0.21.AUCS5D和AUCW5D的直接基因组值之间存在适度的正相关性(0.40),尽管在前5%的1- MB窗口是相同的。在冬季和夏季,不同的基因组与BT相关,因此可能同时选择耐热和耐寒的动物。

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